PH01000514G0680's details annotation
1.Annotation
ICBR annotation: NOL1/NOP2/sun family protein, putative, expressed
Blast result AT5G26180 : 3.90E-58
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000514
Strand: +
| Region | Start | End |
| gene | 442356 | 451641 |
| mRNA | 442356 | 451641 |
| exon | 442356 | 444571 |
| exon | 445413 | 445471 |
| exon | 445650 | 445700 |
| exon | 445924 | 446056 |
| exon | 446744 | 446829 |
| exon | 447019 | 447117 |
| exon | 447211 | 447264 |
| exon | 448659 | 448746 |
| exon | 449230 | 449313 |
| exon | 450053 | 450238 |
| exon | 450515 | 451641 |
| CDS | 444313 | 444571 |
| CDS | 445413 | 445471 |
| CDS | 445650 | 445700 |
| CDS | 445924 | 446056 |
| CDS | 446744 | 446829 |
| CDS | 447019 | 447117 |
| CDS | 447211 | 447264 |
| CDS | 448659 | 448746 |
| CDS | 449230 | 449313 |
| CDS | 450053 | 450238 |
| CDS | 450515 | 450582 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000144 | protein binding, acid-amino acid ligase activity, |
| coexpression network | CFinderM000587 | protein binding, acid-amino acid ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.