PH01000517G0290's details annotation
1.Annotation
ICBR annotation: homeobox and START domains containing protein, putative, expressed
Blast result AT1G73360 : 0.00E+00
Blast annotation: homeodomain GLABROUS 11
2.Location
Scaffold: PH01000517
Strand: +
| Region | Start | End |
| gene | 184683 | 188358 |
| mRNA | 184683 | 188358 |
| exon | 184683 | 184895 |
| exon | 185007 | 185124 |
| exon | 185220 | 185405 |
| exon | 185524 | 185988 |
| exon | 186079 | 186177 |
| exon | 186289 | 186498 |
| exon | 186618 | 186795 |
| exon | 186897 | 187159 |
| exon | 187285 | 187374 |
| exon | 187469 | 188358 |
| CDS | 184801 | 184895 |
| CDS | 185007 | 185124 |
| CDS | 185220 | 185405 |
| CDS | 185524 | 185988 |
| CDS | 186079 | 186177 |
| CDS | 186289 | 186498 |
| CDS | 186618 | 186795 |
| CDS | 186897 | 187159 |
| CDS | 187285 | 187374 |
| CDS | 187469 | 187849 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000070 | HD-ZIP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) Rho GDP-dissociation inhibitor activity, 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol metabolic process, sequence-specific DNA binding, transcription_regulatory_region_sequence-specific_DNA_binding sequence-specific DNA binding transcription factor activity, phosphatidylinositol phosphate kinase activity, regulation of transcription, DNA-dependent, nucleus, Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism Endocytosis |
| coexpression network | CFinderM000478 | HB-HD-ZIP Transcription_Regulator(from iTAK) HD-ZIP Transcription_Regulator(from PlantTFDB) AGC_RSK-2 (from iTAK) COPII vesicle coat, nucleus, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-HD-ZIP |
| Transcription_Regulator(from PlantTFDB) | HD-ZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 16 | 71 |
| PF01852.18 | START | 212 | 434 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.