PH01000519G0390's details annotation
1.Annotation
ICBR annotation: sphingolipid C4-hydroxylase SUR2, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000519
Strand: +
| Region | Start | End |
| gene | 249626 | 253203 |
| mRNA | 249626 | 253203 |
| exon | 249626 | 250382 |
| exon | 251053 | 251100 |
| exon | 251576 | 251623 |
| exon | 251975 | 253203 |
| CDS | 250152 | 250382 |
| CDS | 251053 | 251100 |
| CDS | 251576 | 251623 |
| CDS | 251975 | 252133 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001627 | SET Transcription_Regulator(from iTAK) intracellular protein transport, SNARE_interactions_in_vesicular_transport mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.