PH01000540G0130's details annotation
1.Annotation
ICBR annotation: peroxin-3 family protein, putative, expressed
Blast result AT1G48635 : 3.50E-89
Blast annotation: peroxin 3
2.Location
Scaffold: PH01000540
Strand: +
| Region | Start | End |
| gene | 91776 | 96695 |
| mRNA | 91776 | 96695 |
| exon | 91776 | 92513 |
| exon | 92654 | 92815 |
| exon | 93524 | 93723 |
| exon | 93810 | 93940 |
| exon | 94136 | 94263 |
| exon | 94541 | 94780 |
| exon | 95719 | 96695 |
| CDS | 92497 | 92513 |
| CDS | 92654 | 92815 |
| CDS | 93524 | 93723 |
| CDS | 93810 | 93940 |
| CDS | 94136 | 94263 |
| CDS | 94541 | 94780 |
| CDS | 95719 | 95977 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000566 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, ubiquitin-dependent protein catabolic process, peroxisome organization, integral_component_of_peroxisomal_membrane PHD Transcription_Regulator(from iTAK) bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001853 | peroxisome organization, integral_component_of_peroxisomal_membrane cullin-RING ubiquitin ligase complex, bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04882.11 | Peroxin-3 | 8 | 108 |
| PF04882.11 | Peroxin-3 | 108 | 373 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Peroxisome | peroxin-3 | ko04146 | K13336 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005779 | integral to peroxisomal membrane |
| GO:0007031 | peroxisome organization |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.