PH01000549G0690's details annotation
1.Annotation
ICBR annotation: sister chromatid cohesion 2, putative, expressed
Blast result AT5G15540 : 0.00E+00
Blast annotation: PHD finger family protein
2.Location
Scaffold: PH01000549
Strand: -
| Region | Start | End |
| gene | 495240 | 511091 |
| mRNA | 495240 | 511091 |
| exon | 495240 | 498025 |
| exon | 498134 | 498259 |
| exon | 498342 | 498434 |
| exon | 498569 | 498857 |
| exon | 498940 | 499194 |
| exon | 499270 | 499403 |
| exon | 499491 | 499724 |
| exon | 499796 | 499900 |
| exon | 500076 | 500237 |
| exon | 500774 | 500879 |
| exon | 501784 | 501953 |
| exon | 502787 | 502939 |
| exon | 503016 | 503315 |
| exon | 503844 | 504008 |
| exon | 504086 | 504244 |
| exon | 504337 | 504387 |
| exon | 504463 | 504670 |
| exon | 504741 | 505267 |
| exon | 505426 | 505785 |
| exon | 505944 | 506130 |
| exon | 506257 | 506350 |
| exon | 506652 | 506763 |
| exon | 506873 | 506983 |
| exon | 507127 | 507377 |
| exon | 507472 | 507577 |
| exon | 507661 | 507797 |
| exon | 509149 | 509208 |
| exon | 509653 | 509859 |
| exon | 510285 | 510415 |
| exon | 510501 | 511091 |
| CDS | 497762 | 498025 |
| CDS | 498134 | 498259 |
| CDS | 498342 | 498434 |
| CDS | 498569 | 498857 |
| CDS | 498940 | 499194 |
| CDS | 499270 | 499403 |
| CDS | 499491 | 499724 |
| CDS | 499796 | 499900 |
| CDS | 500076 | 500237 |
| CDS | 500774 | 500879 |
| CDS | 501784 | 501953 |
| CDS | 502787 | 502939 |
| CDS | 503016 | 503315 |
| CDS | 503844 | 504008 |
| CDS | 504086 | 504244 |
| CDS | 504337 | 504387 |
| CDS | 504463 | 504670 |
| CDS | 504741 | 505267 |
| CDS | 505426 | 505785 |
| CDS | 505944 | 506130 |
| CDS | 506257 | 506350 |
| CDS | 506652 | 506763 |
| CDS | 506873 | 506983 |
| CDS | 507127 | 507377 |
| CDS | 507472 | 507577 |
| CDS | 507661 | 507797 |
| CDS | 509149 | 509208 |
| CDS | 509653 | 509859 |
| CDS | 510285 | 510415 |
| CDS | 510501 | 510559 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000149 | SET Transcription_Regulator(from iTAK) DDT Transcription_Regulator(from iTAK) GTnc GlycosylTransferases mitochondrial inner membrane, exocyst, |
| coexpression network | CFinderM000431 | Porphyrin_and_chlorophyll_metabolism C2C2-Dof Transcription_Regulator(from iTAK) HB-BELL Transcription_Regulator(from iTAK) TRAF Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) oxygen-dependent protoporphyrinogen oxidase activity, |
| coexpression network | CFinderM001035 | GT14 GlycosylTransferases CAMTA Transcription_Regulator(from PlantTFDB) microtubule, protein complex, RNA_degradation Phagosome |
| coexpression network | CFinderM001381 | CAMTA Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12765.6 | Cohesin_HEAT | 866 | 907 |
| PF12830.6 | Nipped-B_C | 1357 | 1542 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.