PH01000554G0540's details annotation
1.Annotation
ICBR annotation: protein transport protein Sec23B, putative, expressed
Blast result AT5G43670 : 0.00E+00
Blast annotation: Sec23/Sec24 protein transport family protein
2.Location
Scaffold: PH01000554
Strand: +
| Region | Start | End |
| gene | 387416 | 394278 |
| mRNA | 387416 | 394278 |
| exon | 387416 | 387906 |
| exon | 390610 | 390952 |
| exon | 391569 | 394278 |
| CDS | 387806 | 387906 |
| CDS | 390610 | 390952 |
| CDS | 391569 | 393230 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04811.14 | Sec23_trunk | 75 | 335 |
| PF08033.11 | Sec23_BS | 347 | 447 |
| PF04815.14 | Sec23_helical | 459 | 553 |
| PF00626.21 | Gelsolin | 573 | 659 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | protein transport protein SEC23 | ko04141 | K14006 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0006886 | intracellular protein transport |
| GO:0006888 | ER to Golgi vesicle-mediated transport |
| GO:0030127 | COPII vesicle coat |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.