PH01000561G0150's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G21370 : 3.00E-126
Blast annotation: -
2.Location
Scaffold: PH01000561
Strand: -
| Region | Start | End |
| gene | 116526 | 119476 |
| mRNA | 116526 | 119476 |
| exon | 116526 | 117410 |
| exon | 117577 | 117701 |
| exon | 118296 | 119476 |
| CDS | 117090 | 117410 |
| CDS | 117577 | 117701 |
| CDS | 118296 | 118884 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000551 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine biosynthetic process, Selenocompound_metabolism cellular amino acid biosynthetic process, Cysteine_and_methionine_metabolism zinc ion binding, |
| coexpression network | CFinderM001038 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine biosynthetic process, Selenocompound_metabolism cellular amino acid biosynthetic process, Cysteine_and_methionine_metabolism methylenetetrahydrofolate reductase (NADPH) activity, methionine metabolic process, zinc ion binding, One_carbon_pool_by_folate Carbon_fixation_pathways_in_prokaryotes |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02698.16 | DUF218 | 145 | 273 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.