PH01000561G0580's details annotation
1.Annotation
ICBR annotation: coiled-coil domain-containing protein 55, putative, expressed
Blast result AT2G27285 : 1.20E-61
Blast annotation: Coiled-coil domain-containing protein 55 (DUF2040)
2.Location
Scaffold: PH01000561
Strand: -
| Region | Start | End |
| gene | 411940 | 415544 |
| mRNA | 411940 | 415544 |
| exon | 411940 | 412521 |
| exon | 413169 | 413387 |
| exon | 415052 | 415174 |
| exon | 415267 | 415544 |
| CDS | 412084 | 412521 |
| CDS | 413169 | 413387 |
| CDS | 415052 | 415174 |
| CDS | 415267 | 415428 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001228 | cullin-RING ubiquitin ligase complex, SNF2 Transcription_Regulator(from iTAK) Nucleotide_excision_repair cell redox homeostasis, Ubiquitin_mediated_proteolysis ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM001572 | Protein_processing_in_endoplasmic_reticulum heat shock protein binding, |
| coexpression network | CFinderM001573 | protein refolding, histone_lysine_methylation cellular protein metabolic process, histone_binding zinc ion binding, histone-lysine N-methyltransferase activity, C2H2 Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09745.8 | DUF2040 C | 56 | 172 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.