PH01000561G0670's details annotation
1.Annotation
ICBR annotation: bromodomain domain containing protein, expressed
Blast result AT5G46550 : 1.50E-33
Blast annotation: DNA-binding bromodomain-containing protein
2.Location
Scaffold: PH01000561
Strand: -
| Region | Start | End |
| gene | 495393 | 500355 |
| mRNA | 495393 | 500355 |
| exon | 495393 | 495996 |
| exon | 496083 | 496204 |
| exon | 497906 | 497972 |
| exon | 498091 | 498203 |
| exon | 498490 | 498544 |
| exon | 499084 | 500355 |
| CDS | 495727 | 495996 |
| CDS | 496083 | 496204 |
| CDS | 497906 | 497972 |
| CDS | 498091 | 498203 |
| CDS | 498490 | 498544 |
| CDS | 499084 | 499620 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000486 | |
| coexpression network | CFinderM000496 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, Pseudo ARR-B Transcription_Regulator(from iTAK) ubiquitin-dependent protein catabolic process, diphosphomevalonate decarboxylase activity, L,L-diaminopimelate_aminotransferase_activity Citrate_cycle_(TCA_cycle) Pyruvate_metabolism |
| coexpression network | CFinderM000822 | protein binding, Proteasome |
| coexpression network | CFinderM000823 | ABC_transporters |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00439.24 | Bromodomain | 65 | 149 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.