PH01000561G0770's details annotation
1.Annotation
ICBR annotation: OsFBX135 - F-box domain containing protein, expressed
Blast result AT4G13960 : 3.10E-10
Blast annotation: F-box/RNI-like superfamily protein
2.Location
Scaffold: PH01000561
Strand: -
| Region | Start | End |
| gene | 559661 | 561871 |
| mRNA | 559661 | 561871 |
| exon | 559661 | 561871 |
| CDS | 561131 | 561505 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000220 | phospholipid metabolic process, N-methyltransferase activity, Phosphatidylinositol_signaling_system phosphoglycolate phosphatase activity, |
| coexpression network | CFinderM000354 | chromosome, DNA metabolic process, |
| coexpression network | CFinderM000908 | barrier_septum_assembly Phosphatidylinositol_signaling_system nucleosome, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00646.32 | F-box | 32 | 66 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.