PH01000566G0540's details annotation
1.Annotation
ICBR annotation: Leucine Rich Repeat family protein, expressed
Blast result AT3G58530 : 3.00E-121
Blast annotation: RNI-like superfamily protein
2.Location
Scaffold: PH01000566
Strand: +
| Region | Start | End |
| gene | 376683 | 382077 |
| mRNA | 376683 | 382077 |
| exon | 376683 | 377184 |
| exon | 378385 | 378444 |
| exon | 378628 | 378711 |
| exon | 378797 | 378927 |
| exon | 379003 | 379078 |
| exon | 379741 | 379811 |
| exon | 379963 | 380049 |
| exon | 380132 | 380204 |
| exon | 380283 | 380350 |
| exon | 380431 | 380499 |
| exon | 380572 | 380677 |
| exon | 381243 | 382077 |
| CDS | 377023 | 377184 |
| CDS | 378385 | 378444 |
| CDS | 378628 | 378711 |
| CDS | 378797 | 378927 |
| CDS | 379003 | 379078 |
| CDS | 379741 | 379811 |
| CDS | 379963 | 380049 |
| CDS | 380132 | 380204 |
| CDS | 380283 | 380350 |
| CDS | 380431 | 380499 |
| CDS | 380572 | 380677 |
| CDS | 381243 | 381308 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000379 | arginyl-tRNA aminoacylation, arginine-tRNA ligase activity, tRNA processing, tRNA (guanine-N2-)-methyltransferase activity, tRNA aminoacylation for protein translation, double-stranded RNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13516.5 | LRR_6 | 163 | 180 |
| PF13516.5 | LRR_6 | 264 | 284 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.