PH01000566G0780's details annotation
1.Annotation
ICBR annotation: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Blast result AT5G10290 : 0.00E+00
Blast annotation: leucine-rich repeat transmembrane protein kinase family protein
2.Location
Scaffold: PH01000566
Strand: +
| Region | Start | End |
| gene | 532338 | 538628 |
| mRNA | 532338 | 538628 |
| exon | 532338 | 533352 |
| exon | 533953 | 534096 |
| exon | 535857 | 535928 |
| exon | 536180 | 536250 |
| exon | 536394 | 536534 |
| exon | 536894 | 537235 |
| exon | 537515 | 537960 |
| exon | 538088 | 538628 |
| CDS | 533267 | 533352 |
| CDS | 533953 | 534096 |
| CDS | 535857 | 535928 |
| CDS | 536180 | 536250 |
| CDS | 536394 | 536534 |
| CDS | 536894 | 537235 |
| CDS | 537515 | 537960 |
| CDS | 538088 | 538402 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001751 | RLK-Pelle_LRR-II (from iTAK) Arginine_and_proline_metabolism ion transport, phospholipid transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13855.5 | LRR_8 | 26 | 84 |
| PF00069.24 | Pkinase | 199 | 487 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.