PH01000570G0160's details annotation
1.Annotation
ICBR annotation: ATP-grasp domain containing protein, expressed
Blast result AT1G09430 : 0.00E+00
Blast annotation: ATP-citrate lyase A-3
2.Location
Scaffold: PH01000570
Strand: +
| Region | Start | End |
| gene | 97865 | 102271 |
| mRNA | 97865 | 102271 |
| exon | 97865 | 98075 |
| exon | 99369 | 99545 |
| exon | 99641 | 99883 |
| exon | 100013 | 100064 |
| exon | 100154 | 100268 |
| exon | 100364 | 100445 |
| exon | 100589 | 100684 |
| exon | 100892 | 100993 |
| exon | 101082 | 101198 |
| exon | 101307 | 101423 |
| exon | 101600 | 102271 |
| CDS | 97977 | 98075 |
| CDS | 99369 | 99545 |
| CDS | 99641 | 99883 |
| CDS | 100013 | 100064 |
| CDS | 100154 | 100268 |
| CDS | 100364 | 100445 |
| CDS | 100589 | 100684 |
| CDS | 100892 | 100993 |
| CDS | 101082 | 101198 |
| CDS | 101307 | 101423 |
| CDS | 101600 | 101671 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000899 | glucose-6-phosphate dehydrogenase activity, glucose metabolic process, galactosyltransferase activity, NADP binding, Glutathione_metabolism Pentose_phosphate_pathway Glycine,_serine_and_threonine_metabolism Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin protein glycosylation, phosphoserine phosphatase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, chorismate mutase activity, chorismate metabolic process, |
| coexpression network | CFinderM001042 | CK1_CK1 (from iTAK) protein transport, Citrate_cycle_(TCA_cycle) Carbon_fixation_pathways_in_prokaryotes Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08442.9 | ATP-grasp_2 | 6 | 203 |
| PF16114.4 | Citrate_bind | 242 | 417 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Citrate cycle (TCA cycle) | ATP citrate (pro-S)-lyase [EC:2.3.3.8] | ko00020 | K01648 |
| Carbon fixation pathways in prokaryotes | ATP citrate (pro-S)-lyase [EC:2.3.3.8] | ko00720 | K01648 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.