PH01000571G0710's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT1G49600 : 4.00E-101
Blast annotation: RNA-binding protein 47A
2.Location
Scaffold: PH01000571
Strand: +
| Region | Start | End |
| gene | 512031 | 517830 |
| mRNA | 512031 | 517830 |
| exon | 512031 | 512505 |
| exon | 513411 | 513864 |
| exon | 514503 | 514558 |
| exon | 514639 | 514769 |
| exon | 514883 | 514979 |
| exon | 517450 | 517830 |
| CDS | 512134 | 512505 |
| CDS | 513411 | 513864 |
| CDS | 514503 | 514558 |
| CDS | 514639 | 514769 |
| CDS | 514883 | 514979 |
| CDS | 517450 | 517605 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
| coexpression network | CFinderM000813 | Arp2/3_protein_complex Arp2/3_complex-mediated_actin_nucleation regulation of actin filament polymerization, cytoskeleton, bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001874 | Endocytosis Jumonji Transcription_Regulator(from iTAK) bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 101 | 167 |
| PF00076.21 | RRM_1 | 194 | 264 |
| PF00076.21 | RRM_1 | 295 | 358 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.