PH01000574G0640's details annotation
1.Annotation
ICBR annotation: armadillo/beta-catenin repeat family protein, putative, expressed
Blast result AT1G76390 : 0.00E+00
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000574
Strand: +
| Region | Start | End |
| gene | 536760 | 541718 |
| mRNA | 536760 | 541718 |
| exon | 536760 | 537037 |
| exon | 537461 | 537522 |
| exon | 537883 | 537940 |
| exon | 538131 | 538676 |
| exon | 538758 | 539067 |
| exon | 539784 | 541718 |
| CDS | 537014 | 537037 |
| CDS | 537461 | 537522 |
| CDS | 537883 | 537940 |
| CDS | 538131 | 538676 |
| CDS | 538758 | 539067 |
| CDS | 539784 | 541366 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000316 | RLK-Pelle_RLCK-IV (from iTAK) AGC_NDR (from iTAK) Jumonji Transcription_Regulator(from iTAK) signal transducer activity, |
| coexpression network | CFinderM001621 | AGC_NDR (from iTAK) purine ribonucleoside monophosphate biosynthetic process, IMP biosynthetic process, ubiquitin ligase complex, G-protein coupled receptor signaling pathway, AMP deaminase activity, guanyl nucleotide binding, G-protein_beta/gamma-subunit_complex_binding deaminase activity, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04564.14 | U-box | 76 | 150 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000151 | ubiquitin ligase complex |
| GO:0004842 | ubiquitin-protein ligase activity |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
| GO:0016567 | protein ubiquitination |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.