PH01000583G0410's details annotation
1.Annotation
ICBR annotation: OsFBX133 - F-box domain containing protein, expressed
Blast result AT1G21760 : 8.00E-108
Blast annotation: F-box protein 7
2.Location
Scaffold: PH01000583
Strand: -
| Region | Start | End |
| gene | 258285 | 264189 |
| mRNA | 258285 | 264189 |
| exon | 258285 | 258583 |
| exon | 258801 | 259011 |
| exon | 259095 | 259153 |
| exon | 259430 | 259483 |
| exon | 259582 | 259655 |
| exon | 261113 | 261209 |
| exon | 261289 | 261405 |
| exon | 261748 | 261854 |
| exon | 262001 | 262087 |
| exon | 263310 | 264189 |
| CDS | 258524 | 258583 |
| CDS | 258801 | 259011 |
| CDS | 259095 | 259153 |
| CDS | 259430 | 259483 |
| CDS | 259582 | 259655 |
| CDS | 261113 | 261209 |
| CDS | 261289 | 261405 |
| CDS | 261748 | 261854 |
| CDS | 262001 | 262087 |
| CDS | 263310 | 263460 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000837 | glutamyl-tRNA aminoacylation, guanosine tetraphosphate metabolic process, tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis Porphyrin_and_chlorophyll_metabolism glutamate-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, tRNA binding, tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12937.6 | F-box-like | 107 | 151 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.