PH01000588G0040's details annotation
1.Annotation
ICBR annotation: Cupin domain containing protein, expressed
Blast result AT3G62020 : 2.30E-78
Blast annotation: germin-like protein 10
2.Location
Scaffold: PH01000588
Strand: +
| Region | Start | End |
| gene | 54262 | 55946 |
| mRNA | 54262 | 55946 |
| exon | 54262 | 54968 |
| exon | 55057 | 55946 |
| CDS | 54845 | 54968 |
| CDS | 55057 | 55598 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001611 | CAMTA Transcription_Regulator(from PlantTFDB) ABC_transporters Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00190.21 | Cupin_1 | 64 | 209 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0030145 | manganese ion binding |
| GO:0045735 | nutrient reservoir activity |
| GO:0048046 | apoplast |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.