PH01000604G0340's details annotation
1.Annotation
ICBR annotation: ATSIZ1/SIZ1, putative, expressed
Blast result AT5G60410 : 8.00E-171
Blast annotation: DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
2.Location
Scaffold: PH01000604
Strand: -
| Region | Start | End |
| gene | 188995 | 203321 |
| mRNA | 188995 | 203321 |
| exon | 188995 | 190432 |
| exon | 190516 | 190596 |
| exon | 191616 | 191720 |
| exon | 192120 | 192281 |
| exon | 194569 | 194676 |
| exon | 195515 | 195588 |
| exon | 195915 | 195990 |
| exon | 196951 | 197032 |
| exon | 197693 | 197775 |
| exon | 198307 | 198442 |
| exon | 198718 | 198786 |
| exon | 201779 | 201857 |
| exon | 202463 | 202505 |
| exon | 202816 | 202896 |
| exon | 202967 | 203321 |
| CDS | 189218 | 190432 |
| CDS | 190516 | 190596 |
| CDS | 191616 | 191720 |
| CDS | 192120 | 192281 |
| CDS | 194569 | 194676 |
| CDS | 195515 | 195588 |
| CDS | 195915 | 195990 |
| CDS | 196951 | 197032 |
| CDS | 197693 | 197775 |
| CDS | 198307 | 198442 |
| CDS | 198718 | 198786 |
| CDS | 201779 | 201857 |
| CDS | 202463 | 202505 |
| CDS | 202816 | 202896 |
| CDS | 202967 | 202993 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000256 | signal recognition particle, proton-transporting two-sector ATPase complex, proton-transporting domain, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02037.26 | SAP | 15 | 43 |
| PF02891.19 | zf-MIZ | 335 | 383 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.