PH01000606G0020's details annotation
1.Annotation
ICBR annotation: ribosomal protein L13, putative, expressed
Blast result AT5G48760 : 2.00E-101
Blast annotation: Ribosomal protein L13 family protein
2.Location
Scaffold: PH01000606
Strand: -
| Region | Start | End |
| gene | 14054 | 16786 |
| mRNA | 14054 | 16786 |
| exon | 14054 | 14815 |
| exon | 16044 | 16131 |
| exon | 16223 | 16339 |
| exon | 16440 | 16786 |
| CDS | 14672 | 14815 |
| CDS | 16044 | 16131 |
| CDS | 16223 | 16339 |
| CDS | 16440 | 16711 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000074 | Ribosome translation, structural constituent of ribosome, intracellular, |
| coexpression network | CFinderM000838 | Ribosome translation, structural constituent of ribosome, methylation, large ribosomal subunit, intracellular, nucleobase-containing compound metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00572.17 | Ribosomal_L13 | 12 | 119 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L13Ae | ko03011 | K02872 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0015934 | large ribosomal subunit |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.