Annotation of co-expression genes

PH01000606G0580's details annotation

1.Annotation

ICBR annotation: transcriptional adaptor, putative, expressed

Blast result AT4G16420 : 2.00E-139
Blast annotation: homolog of yeast ADA2 2B

2.Location

Scaffold: PH01000606
Strand: +

RegionStartEnd
gene418157427503
mRNA418157427503
exon418157418761
exon418851419094
exon419726419791
exon419866419991
exon420070420145
exon421351421416
exon421862422084
exon422470422680
exon424471424785
exon424924425101
exon425704425716
exon426570427503
CDS418709418761
CDS418851419094
CDS419726419791
CDS419866419991
CDS420070420145
CDS421351421416
CDS421862422084
CDS422470422680
CDS424471424785
CDS424924425101
CDS425704425716
CDS426570427242

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001516Ribosome_biogenesis_in_eukaryotes
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)MYB-related
Transcription_Regulator(from PlantTFDB)MYB_related

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00569.16ZZ5090
PF00249.30Myb_DNA-binding110151

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003682chromatin binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.