PH01000606G0880's details annotation
1.Annotation
ICBR annotation: serine/threonine-protein kinase TOUSLED, putative, expressed
Blast result AT5G20930 : 2.00E-114
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000606
Strand: +
| Region | Start | End |
| gene | 570090 | 579064 |
| mRNA | 570090 | 579064 |
| exon | 570090 | 570786 |
| exon | 571072 | 571161 |
| exon | 571286 | 571492 |
| exon | 572191 | 572241 |
| exon | 572670 | 572777 |
| exon | 573698 | 573810 |
| exon | 574145 | 574211 |
| exon | 574951 | 575017 |
| exon | 575517 | 575614 |
| exon | 575700 | 575879 |
| exon | 577118 | 579064 |
| CDS | 570562 | 570786 |
| CDS | 571072 | 571161 |
| CDS | 571286 | 571492 |
| CDS | 572191 | 572241 |
| CDS | 572670 | 572777 |
| CDS | 573698 | 573810 |
| CDS | 574145 | 574211 |
| CDS | 574951 | 575017 |
| CDS | 575517 | 575614 |
| CDS | 575700 | 575879 |
| CDS | 577118 | 577369 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001072 | nucleus, TLK (from iTAK) Non-homologous_end-joining SWI/SNF-BAF60b Transcription_Regulator(from iTAK) Homologous_recombination SNF2 Transcription_Regulator(from iTAK) double-strand break repair, histone modification, DNA metabolic process, transcription initiation, DNA-dependent, |
| coexpression network | CFinderM001160 | TLK (from iTAK) cell_cortex |
| coexpression network | CFinderM001640 | TLK (from iTAK) transcription factor TFIID complex, SNF2 Transcription_Regulator(from iTAK) transcription initiation, DNA-dependent, Nucleotide_excision_repair Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 387 | 473 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.