PH01000612G0550's details annotation
1.Annotation
ICBR annotation: chaperonin Cpn60/TCP-1, putative, expressed
Blast result AT1G71010 : 0.00E+00
Blast annotation: FORMS APLOID AND BINUCLEATE CELLS 1C
2.Location
Scaffold: PH01000612
Strand: +
| Region | Start | End |
| gene | 367686 | 379391 |
| mRNA | 367686 | 379391 |
| exon | 367686 | 369693 |
| exon | 370733 | 371437 |
| exon | 371713 | 371866 |
| exon | 371984 | 372328 |
| exon | 372739 | 373656 |
| exon | 373764 | 374092 |
| exon | 374160 | 374283 |
| exon | 374354 | 374524 |
| exon | 374648 | 376111 |
| exon | 377400 | 377663 |
| exon | 378660 | 379391 |
| CDS | 369119 | 369693 |
| CDS | 370733 | 371437 |
| CDS | 371713 | 371866 |
| CDS | 371984 | 372328 |
| CDS | 372739 | 373656 |
| CDS | 373764 | 374092 |
| CDS | 374160 | 374283 |
| CDS | 374354 | 374524 |
| CDS | 374648 | 376111 |
| CDS | 377400 | 377663 |
| CDS | 378660 | 378983 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000810 | CAMTA Transcription_Regulator(from PlantTFDB) glycerol-3-phosphate dehydrogenase complex, Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM000888 | phosphatidylinositol metabolic process, phosphatidylinositol phosphate kinase activity, Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system RLK-Pelle_LRR-VI-1 (from iTAK) 1-phosphatidylinositol-4-phosphate 5-kinase activity, cellular protein metabolic process, Phagosome Endocytosis ATP binding, |
| coexpression network | CFinderM001611 | CAMTA Transcription_Regulator(from PlantTFDB) ABC_transporters Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01363.20 | FYVE | 18 | 83 |
| PF00118.23 | Cpn60_TCP1 | 378 | 629 |
| PF01504.17 | PIP5K | 1535 | 1700 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Inositol phosphate metabolism | 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.15] | ko00562 | K00921 |
| Phosphatidylinositol signaling system | 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.15] | ko04070 | K00921 |
| Phagosome | 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.15] | ko04145 | K00921 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0016307 | phosphatidylinositol phosphate kinase activity |
| GO:0044267 | cellular protein metabolic process |
| GO:0046488 | phosphatidylinositol metabolic process |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.