Annotation of co-expression genes

PH01000620G0480's details annotation

1.Annotation

ICBR annotation: ferrochelatase-2, chloroplast precursor, putative, expressed

Blast result AT2G30390 : 6.10E-26
Blast annotation: ferrochelatase 2

2.Location

Scaffold: PH01000620
Strand: -

RegionStartEnd
gene365102369554
mRNA365102369554
exon365102365698
exon365799365879
exon366952367017
exon367635367836
exon368761369554
CDS365654365698
CDS365799365879
CDS366952367017
CDS367635367836
CDS368761368912

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM0003146-phosphofructokinase complex,
heme biosynthetic process,
ferrochelatase activity,
RLK-Pelle_DLSV (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00762.18Ferrochelatase51102

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004325ferrochelatase activity
GO:0006783heme biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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