PH01000630G0170's details annotation
1.Annotation
ICBR annotation: CDK5RAP1, putative, expressed
Blast result AT1G72090 : 0.00E+00
Blast annotation: Methylthiotransferase
2.Location
Scaffold: PH01000630
Strand: +
| Region | Start | End |
| gene | 168223 | 173543 |
| mRNA | 168223 | 173543 |
| exon | 168223 | 168876 |
| exon | 169742 | 169833 |
| exon | 170064 | 170313 |
| exon | 170414 | 170467 |
| exon | 170678 | 170753 |
| exon | 170848 | 171056 |
| exon | 171187 | 171295 |
| exon | 171452 | 171544 |
| exon | 171664 | 171824 |
| exon | 171930 | 172355 |
| exon | 172745 | 173543 |
| CDS | 168706 | 168876 |
| CDS | 169742 | 169833 |
| CDS | 170064 | 170313 |
| CDS | 170414 | 170467 |
| CDS | 170678 | 170753 |
| CDS | 170848 | 171056 |
| CDS | 171187 | 171295 |
| CDS | 171452 | 171544 |
| CDS | 171664 | 171824 |
| CDS | 171930 | 172355 |
| CDS | 172745 | 172834 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001133 | tRNA_(cytosine-5-)-methyltransferase_activity RNA modification, C3H Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001231 | cullin-RING ubiquitin ligase complex, RNA modification, ubiquitin-dependent protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00919.19 | UPF0004 | 57 | 124 |
| PF04055.20 | Radical_SAM | 191 | 334 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0009451 | RNA modification |
| GO:0051536 | iron-sulfur cluster binding |
| GO:0051539 | 4 iron, 4 sulfur cluster binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.