Annotation of co-expression genes

PH01000639G0480's details annotation

1.Annotation

ICBR annotation: myb-like DNA-binding domain containing protein, expressed

Blast result AT5G52660 : 2.10E-72
Blast annotation: Homeodomain-like superfamily protein

2.Location

Scaffold: PH01000639
Strand: -

RegionStartEnd
gene312685318570
mRNA312685318570
exon312685313933
exon314441314500
exon315196315305
exon316495316593
exon317002317053
exon317739317796
exon318449318570
CDS313832313933
CDS314441314500
CDS315196315305
CDS316495316593
CDS317002317053
CDS317739317796
CDS318449318570

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000794MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
RLK-Pelle_CR4L (from iTAK)
coexpression networkCFinderM000795

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)MYB-related
Transcription_Regulator(from PlantTFDB)MYB_related

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00249.30Myb_DNA-binding61105

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003682chromatin binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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