CFinderM000795's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000117G0110O-fucosyltransferase family proteinAT1G52630 (4.00E-143)
PH01000122G0020-- (-)
PH01000158G1420-- (-)
PH01000639G0480Homeodomain-like superfamily proteinAT5G52660 (2.10E-72)
PH01001031G0020Tetratricopeptide repeat (TPR)-like superfamily proteinAT1G77230 (7.00E-48)
PH01002565G0100ARM repeat superfamily proteinAT1G23180 (6.10E-28)
PH01002604G0050RING 1AAT5G44280 (2.50E-63)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000794MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
RLK-Pelle_CR4L (from iTAK)
details
CFinderM000919mRNA_cleavage_factor_complex
mRNA_polyadenylation
phytochelatin biosynthetic process,
response to metal ion,
nitrogen compound metabolic process,
Styrene_degradation
Regulation_of_autophagy
Aminobenzoate_degradation
Tryptophan_metabolism
Cyanoamino_acid_metabolism
glutathione gamma-glutamylcysteinyltransferase activity,
mRNA_binding
Nitrogen_metabolism
C3H Transcription_Regulator(from PlantTFDB)
GNAT Transcription_Regulator(from iTAK)
details

4.Expression profilings

Created with Highcharts 4.1.6Gene expression profiling among different tissue samples02468leaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR105071PH01000117G0110PH01000122G0020PH01000158G1420PH01000639G0480PH01001031G0020PH01002565G0100PH01002604G0050Highcharts.com