Gene details

Annotation of co-expression genes

PH01001031G0020's details annotation

1.Annotation

ICBR annotation: tetratricopeptide repeat domain containing protein, expressed

Blast result AT1G77230 : 7.00E-48
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein

2.Location

Scaffold: PH01001031
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000794	MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) RLK-Pelle_CR4L (from iTAK)
coexpression network	CFinderM000795
coexpression network	CFinderM000919	mRNA_cleavage_factor_complex mRNA_polyadenylation phytochelatin biosynthetic process, response to metal ion, nitrogen compound metabolic process, Styrene_degradation Regulation_of_autophagy Aminobenzoate_degradation Tryptophan_metabolism Cyanoamino_acid_metabolism glutathione gamma-glutamylcysteinyltransferase activity, mRNA_binding Nitrogen_metabolism C3H Transcription_Regulator(from PlantTFDB) GNAT Transcription_Regulator(from iTAK)

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF13432.5	TPR_16	94	155

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0005515	protein binding

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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