PH01002604G0050's details annotation
1.Annotation
ICBR annotation: zinc finger C3HC4 type family protein, putative, expressed
Blast result AT5G44280 : 2.50E-63
Blast annotation: RING 1A
2.Location
Scaffold: PH01002604
Strand: -
| Region | Start | End |
| gene | 9357 | 15970 |
| mRNA | 9357 | 15970 |
| exon | 9357 | 10141 |
| exon | 10239 | 10439 |
| exon | 10545 | 10652 |
| exon | 10995 | 11540 |
| exon | 11646 | 11687 |
| exon | 11788 | 11908 |
| exon | 12051 | 12132 |
| exon | 12556 | 12614 |
| exon | 13586 | 13640 |
| exon | 14463 | 14540 |
| exon | 14666 | 15970 |
| CDS | 10109 | 10141 |
| CDS | 10239 | 10439 |
| CDS | 10545 | 10652 |
| CDS | 10995 | 11540 |
| CDS | 11646 | 11687 |
| CDS | 11788 | 11908 |
| CDS | 12051 | 12132 |
| CDS | 12556 | 12614 |
| CDS | 13586 | 13640 |
| CDS | 14463 | 14540 |
| CDS | 14666 | 14834 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000795 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13923.5 | zf-C3HC4_2 | 115 | 155 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.