Annotation of co-expression genes

PH01000642G0610's details annotation

1.Annotation

ICBR annotation: 1,3-beta-glucan synthase component domain containing protein, expressed

Blast result AT5G13000 : 0.00E+00
Blast annotation: glucan synthase-like 12

2.Location

Scaffold: PH01000642
Strand: +

RegionStartEnd
gene367731384998
mRNA367731384998
exon367731368270
exon368643368743
exon369274369398
exon369484369577
exon369727369837
exon369940370056
exon370172370264
exon370363370454
exon370581370707
exon371613371750
exon371822371898
exon371995372088
exon374764375021
exon375108375160
exon377959378088
exon378231378382
exon379007379116
exon379214379339
exon379606379780
exon380844380985
exon381286381408
exon381539381658
exon381731381849
exon381964382047
exon382370382482
exon382573382802
exon382884383681
exon383793383843
exon384055384240
exon384336384998
CDS368051368270
CDS368643368743
CDS369274369398
CDS369484369577
CDS369727369837
CDS369940370056
CDS370172370264
CDS370363370454
CDS370581370707
CDS371613371750
CDS371822371898
CDS371995372088
CDS374764375021
CDS375108375160
CDS377959378088
CDS378231378382
CDS379007379116
CDS379214379339
CDS379606379780
CDS380844380985
CDS381286381408
CDS381539381658
CDS381731381849
CDS381964382047
CDS382370382482
CDS382573382802
CDS382884383681
CDS383793383843
CDS384055384240
CDS384336384584

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001045membrane,
1,3-beta-D-glucan synthase complex,
Glutathione_metabolism
MYB_related Transcription_Regulator(from PlantTFDB)
Ascorbate_and_aldarate_metabolism
MYB-related Transcription_Regulator(from iTAK)
coexpression networkCFinderM0013031,3-beta-D-glucan synthase complex,
Methane_metabolism
(1->3)-beta-D-glucan biosynthetic process,
drug transmembrane transport,
membrane,
antiporter activity,
drug transmembrane transporter activity,
1,3-beta-D-glucan synthase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04652.15Vta153180
PF14288.5FKS1_dom1330442
PF02364.14Glucan_synthase627834
PF02364.14Glucan_synthase8841352

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:00001481,3-beta-D-glucan synthase complex
GO:00038431,3-beta-D-glucan synthase activity
GO:0006075(1->3)-beta-D-glucan biosynthetic process
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.