Annotation of co-expression genes

PH01000648G0190's details annotation

1.Annotation

ICBR annotation: phosphatase, putative, expressed

Blast result AT5G03080 : 1.40E-83
Blast annotation: Phosphatidic acid phosphatase (PAP2) family protein

2.Location

Scaffold: PH01000648
Strand: -

RegionStartEnd
gene8768191581
mRNA8768191581
exon8768188143
exon8999991581
CDS8793788143
CDS8999990448

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000830cytoskeleton,
proton-transporting ATP synthase complex, catalytic core F(1),
phagocytosis,
branched chain family amino acid biosynthetic process,
signal peptide processing,
phosphoacetylglucosamine mutase activity,
Other_glycan_degradation
coexpression networkCFinderM001599N-Glycan_biosynthesis
membrane,
coexpression networkCFinderM001726methyltransferase activity,
fucosyltransferase_activity
DNA methylation,
protein methylation,
Various_types_of_N-glycan_biosynthesis
N-Glycan_biosynthesis
membrane,
protein glycosylation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01569.20PAP257171

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
N-Glycan biosynthesisdolichyldiphosphatase [EC:3.6.1.43]ko00510K07252

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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