PH01000653G0790's details annotation
1.Annotation
ICBR annotation: proteophosphoglycan ppg4, putative, expressed
Blast result AT4G38280 : 2.30E-12
Blast annotation: -
2.Location
Scaffold: PH01000653
Strand: -
| Region | Start | End |
| gene | 517686 | 520081 |
| mRNA | 517686 | 520081 |
| exon | 517686 | 518372 |
| exon | 518533 | 518616 |
| exon | 518692 | 520081 |
| CDS | 518251 | 518372 |
| CDS | 518533 | 518616 |
| CDS | 518692 | 519448 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001502 | SET Transcription_Regulator(from iTAK) ribonucleoprotein complex, nucleus, histone_lysine_methylation RNA processing, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.