Annotation of co-expression genes

PH01000669G0350's details annotation

1.Annotation

ICBR annotation: S-formylglutathione hydrolase, putative, expressed

Blast result AT2G41530 : 1.50E-89
Blast annotation: S-formylglutathione hydrolase

2.Location

Scaffold: PH01000669
Strand: +

RegionStartEnd
gene246463252811
mRNA246463252811
exon246463247127
exon247209247326
exon248725248772
exon250735250931
exon251322251387
exon252319252811
CDS246966247127
CDS247209247326
CDS248725248772
CDS250735250931
CDS251322251387
CDS252319252441

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001762isocitrate metabolic process,
formaldehyde_catabolic_process
isocitrate dehydrogenase (NADP+) activity,
S-formylglutathione hydrolase activity,
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity,
carboxylesterase activity,
Carbon_fixation_pathways_in_prokaryotes
Peroxisome
Glutathione_metabolism
Citrate_cycle_(TCA_cycle)
NAD binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00756.19Esterase32209

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004091carboxylesterase activity
GO:0018738S-formylglutathione hydrolase activity
GO:0046294formaldehyde catabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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