Annotation of co-expression genes

PH01000673G0090's details annotation

1.Annotation

ICBR annotation: RNA-binding motif protein, putative, expressed

Blast result AT2G29580 : 9.00E-174
Blast annotation: CCCH-type zinc fingerfamily protein with RNA-binding domain

2.Location

Scaffold: PH01000673
Strand: +

RegionStartEnd
gene8748093236
mRNA8748093236
exon8748088567
exon8910189370
exon8971589938
exon9118793236
CDS8846388567
CDS8910189370
CDS8971589938
CDS9118792039

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000008TKL-Pl-4 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
transferase activity, transferring phosphorus-containing groups,
protein phosphorylation,
Spliceosome
protein kinase activity,
ATP binding,
protein serine/threonine kinase activity,
exocyst,
chloroplast,
coexpression networkCFinderM000418tRNA aminoacylation for protein translation,
coexpression networkCFinderM000575Protein_processing_in_endoplasmic_reticulum
zinc ion binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16131.4Torus134194
PF00076.21RRM_1230287

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Spliceosomepre-mRNA-splicing factor RBM22/SLT11ko03041K12872

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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