PH01000673G0630's details annotation
1.Annotation
ICBR annotation: SET domain containing protein, expressed
Blast result AT2G23380 : 0.00E+00
Blast annotation: SET domain-containing protein
2.Location
Scaffold: PH01000673
Strand: +
| Region | Start | End |
| gene | 479850 | 490083 |
| mRNA | 479850 | 490083 |
| exon | 479850 | 482330 |
| exon | 482456 | 482605 |
| exon | 482690 | 482737 |
| exon | 482804 | 482872 |
| exon | 482994 | 483706 |
| exon | 485440 | 485575 |
| exon | 485659 | 485879 |
| exon | 486564 | 486695 |
| exon | 487390 | 487476 |
| exon | 487858 | 487948 |
| exon | 488605 | 488652 |
| exon | 488724 | 488852 |
| exon | 488992 | 490083 |
| CDS | 482247 | 482330 |
| CDS | 482456 | 482605 |
| CDS | 482690 | 482737 |
| CDS | 482804 | 482872 |
| CDS | 482994 | 483706 |
| CDS | 485440 | 485575 |
| CDS | 485659 | 485879 |
| CDS | 486564 | 486695 |
| CDS | 487390 | 487476 |
| CDS | 487858 | 487948 |
| CDS | 488605 | 488652 |
| CDS | 488724 | 488852 |
| CDS | 488992 | 489261 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001049 | microtubule associated complex, microtubule-based movement, microtubule motor activity, PcG_protein_complex F-actin capping protein complex, Sesquiterpenoid_and_triterpenoid_biosynthesis spindle pole, WASH_complex microtubule organizing center, DNA polymerase III complex, RLK-Pelle_RLCK-V (from iTAK) CK1_CK1 (from iTAK) Pantothenate_and_CoA_biosynthesis macromolecule biosynthetic process, |
| coexpression network | CFinderM001285 | PcG_protein_complex cation:chloride_symporter_activity SET Transcription_Regulator(from iTAK) cytoskeleton, ion transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00856.27 | SET | 587 | 690 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0031519 | PcG protein complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.