|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | microtubule associated complex, | 0.000663384 | GO:0005875 | | microtubule-based movement, | 0.000801619 | GO:0007018 | | microtubule motor activity, | 0.00173421 | GO:0003777 | | PcG_protein_complex | 0.016464124 | GO:0031519 | | F-actin capping protein complex, | 0.016464124 | GO:0008290 | | Sesquiterpenoid_and_triterpenoid_biosynthesis | 0.021618391 | KEGG | | spindle pole, | 0.027389249 | GO:0000922 | | WASH_complex | 0.027389249 | GO:0071203 | | microtubule organizing center, | 0.027389249 | GO:0005815 | | DNA polymerase III complex, | 0.028156846 | GO:0009360 | | RLK-Pelle_RLCK-V (from iTAK) | 0.035365441 | GFam | | CK1_CK1 (from iTAK) | 0.035365441 | GFam | | Pantothenate_and_CoA_biosynthesis | 0.044520315 | KEGG | | macromolecule biosynthetic process, | 0.046465151 | GO:0009059 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000003G0410 | AAA-type ATPase family protein | AT4G24790 (2.00E-115) | | PH01000077G1710 | alpha/beta-Hydrolases superfamily protein | AT5G36210 (3.60E-51) | | PH01000132G0780 | F-box and associated interaction domains-containing protein | AT3G10240 (1.80E-09) | | PH01000291G0960 | DNAJ heat shock family protein | AT2G20560 (1.80E-60) | | PH01000376G0170 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT3G49650 (0.00E+00) | | PH01000393G0180 | RNA-binding protein-defense related 1 | AT4G03110 (1.30E-69) | | PH01000456G0500 | plectin-related | AT2G26770 (3.20E-37) | | PH01000673G0630 | SET domain-containing protein | AT2G23380 (0.00E+00) | | PH01000810G0380 | kinesin-like calmodulin-binding protein (ZWICHEL) | AT5G65930 (1.00E-64) | | PH01000810G0400 | kinesin-like calmodulin-binding protein (ZWICHEL) | AT5G65930 (0.00E+00) | | PH01001208G0410 | Protein kinase superfamily protein | AT2G42960 (2.00E-159) | | PH01001311G0530 | alpha/beta-Hydrolases superfamily protein | AT3G48080 (1.00E-105) | | PH01001512G0430 | GAMMA-TUBULIN COMPLEX PROTEIN 4 | AT3G53760 (3.60E-61) | | PH01002058G0250 | 4-phosphopantetheinyl transferase superfamily | AT3G11470 (1.50E-63) | | PH01002343G0150 | Transducin/WD40 repeat-like superfamily protein | AT1G10580 (0.00E+00) | | PH01002979G0180 | casein kinase I-like 10 | AT3G23340 (5.00E-164) | | PH01004274G0080 | Subunits of heterodimeric actin filament capping protein Capz superfamily | AT1G71790 (3.00E-108) | | PH01005976G0040 | squalene synthase 1 | AT4G34640 (5.00E-122) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000254 | GNAT Transcription_Regulator(from iTAK)
GT47 GlycosylTransferases
HSF Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000504 | cytoplasm,
microtubule associated complex,
Pyruvate_metabolism
Fatty_acid_biosynthesis
Glycine,_serine_and_threonine_metabolism
Valine,_leucine_and_isoleucine_degradation
| details | | CFinderM000713 | signal peptide processing,
tRNA modification,
tRNA_guanylyltransferase_activity
F-actin capping protein complex,
actin cytoskeleton organization,
WASH_complex
| details | | CFinderM001048 | F-actin capping protein complex,
WASH_complex
actin cytoskeleton organization,
actin binding,
CK1_CK1 (from iTAK)
macromolecule biosynthetic process,
cytoplasm,
holo-[acyl-carrier-protein] synthase activity,
Pantothenate_and_CoA_biosynthesis
| details | | CFinderM001050 | SNARE_interactions_in_vesicular_transport
| details | | CFinderM001182 | microtubule associated complex,
microtubule-based movement,
microtubule motor activity,
CAMK_CDPK (from iTAK)
phosphatidylinositol_dephosphorylation
potassium ion binding,
pyruvate kinase activity,
hydrolase activity, acting on glycosyl bonds,
| details | | CFinderM001220 | vesicle docking involved in exocytosis,
Peroxisome
Fatty_acid_metabolism
| details | | CFinderM001285 | PcG_protein_complex
cation:chloride_symporter_activity
SET Transcription_Regulator(from iTAK)
cytoskeleton,
ion transport,
| details | | CFinderM001365 | HSF Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
GT47 GlycosylTransferases
| details | | CFinderM001450 | tRNA processing,
| details | | CFinderM001476 | RLK-Pelle_RLCK-V (from iTAK)
spermine biosynthetic process,
spermidine biosynthetic process,
cytoskeleton,
Cysteine_and_methionine_metabolism
Arginine_and_proline_metabolism
microtubule associated complex,
adenosylmethionine decarboxylase activity,
| details | | CFinderM001740 | Glycine,_serine_and_threonine_metabolism
aminomethyltransferase activity,
aspartate kinase activity,
Biotin_metabolism
Lysine_biosynthesis
glycine catabolic process,
cellular amino acid biosynthetic process,
Fatty_acid_biosynthesis
Cysteine_and_methionine_metabolism
| details | | CFinderM001894 | AGC_NDR (from iTAK)
Golgi apparatus,
membrane coat,
clathrin adaptor complex,
nucleic acid binding,
| details | | CFinderM001895 | phenylalanyl-tRNA aminoacylation,
mitochondrial outer membrane,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
tRNA binding,
| details |
4.Expression profilings |
