CFinderM001740's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Glycine,_serine_and_threonine_metabolism0.004281852KEGG
aminomethyltransferase activity,0.00855969GO:0004047
aspartate kinase activity,0.00855969GO:0004072
Biotin_metabolism0.012829505KEGG
Lysine_biosynthesis0.012829505KEGG
glycine catabolic process,0.015455217GO:0006546
cellular amino acid biosynthetic process,0.019541457GO:0008652
Fatty_acid_biosynthesis0.021345784KEGG
Cysteine_and_methionine_metabolism0.032777624KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000291G0960DNAJ heat shock family proteinAT2G20560 (1.80E-60)
PH01000299G0150Copine (Calcium-dependent phospholipid-binding protein) familyAT1G67800 (4.80E-70)
PH01000439G0840Glycine cleavage T-protein familyAT4G12130 (3.00E-115)
PH01000932G0150Ankyrin repeat family proteinAT3G12360 (0.00E+00)
PH01001791G0390NAD(P)-binding Rossmann-fold superfamily proteinAT2G05990 (7.00E-114)
PH01002160G0190aspartate kinase 1AT5G13280 (1.00E-171)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000236NAK (from iTAK)
STAT Transcription_Regulator(from PlantTFDB)
Glycine,_serine_and_threonine_metabolism
magnesium_ion_transport
TKL-Pl-5 (from iTAK)
magnesium_ion_transmembrane_transporter_activity
details
CFinderM000504cytoplasm,
microtubule associated complex,
Pyruvate_metabolism
Fatty_acid_biosynthesis
Glycine,_serine_and_threonine_metabolism
Valine,_leucine_and_isoleucine_degradation
details
CFinderM001049microtubule associated complex,
microtubule-based movement,
microtubule motor activity,
PcG_protein_complex
F-actin capping protein complex,
Sesquiterpenoid_and_triterpenoid_biosynthesis
spindle pole,
WASH_complex
microtubule organizing center,
DNA polymerase III complex,
RLK-Pelle_RLCK-V (from iTAK)
CK1_CK1 (from iTAK)
Pantothenate_and_CoA_biosynthesis
macromolecule biosynthetic process,
details
CFinderM001450tRNA processing,
details
CFinderM001481details

4.Expression profilings

Created with Highcharts 4.1.6Gene expression profiling among different tissue samples0123456leaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR105071PH01000291G0960PH01000299G0150PH01000439G0840PH01000932G0150PH01001791G0390PH01002160G0190Highcharts.com