PH01001791G0390's details annotation
1.Annotation
ICBR annotation: enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed
Blast result AT2G05990 : 7.00E-114
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01001791
Strand: +
| Region | Start | End |
| gene | 240944 | 245692 |
| mRNA | 240944 | 245692 |
| exon | 240944 | 241501 |
| exon | 242847 | 242956 |
| exon | 243379 | 243426 |
| exon | 243533 | 243607 |
| exon | 243695 | 243806 |
| exon | 244479 | 244530 |
| exon | 244611 | 244662 |
| exon | 244769 | 244826 |
| exon | 245079 | 245177 |
| exon | 245269 | 245692 |
| CDS | 241255 | 241501 |
| CDS | 242847 | 242956 |
| CDS | 243379 | 243426 |
| CDS | 243533 | 243607 |
| CDS | 243695 | 243806 |
| CDS | 244479 | 244530 |
| CDS | 244611 | 244662 |
| CDS | 244769 | 244826 |
| CDS | 245079 | 245177 |
| CDS | 245269 | 245399 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000504 | cytoplasm, microtubule associated complex, Pyruvate_metabolism Fatty_acid_biosynthesis Glycine,_serine_and_threonine_metabolism Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM001740 | Glycine,_serine_and_threonine_metabolism aminomethyltransferase activity, aspartate kinase activity, Biotin_metabolism Lysine_biosynthesis glycine catabolic process, cellular amino acid biosynthetic process, Fatty_acid_biosynthesis Cysteine_and_methionine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13561.5 | adh_short_C2 | 90 | 314 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Fatty acid biosynthesis | enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9;EC:1.3.1.10] | ko00061 | K00208 |
| Biotin metabolism | enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9;EC:1.3.1.10] | ko00780 | K00208 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.