PH01002160G0190's details annotation
1.Annotation
ICBR annotation: aspartokinase 3, chloroplast precursor, putative, expressed
Blast result AT5G13280 : 1.00E-171
Blast annotation: aspartate kinase 1
2.Location
Scaffold: PH01002160
Strand: -
| Region | Start | End |
| gene | 168027 | 173416 |
| mRNA | 168027 | 173416 |
| exon | 168027 | 168730 |
| exon | 168826 | 168939 |
| exon | 168995 | 169081 |
| exon | 169518 | 169610 |
| exon | 169708 | 169827 |
| exon | 170297 | 170413 |
| exon | 170591 | 170686 |
| exon | 170759 | 170874 |
| exon | 171597 | 171639 |
| exon | 172028 | 172182 |
| exon | 172264 | 172304 |
| exon | 172389 | 172471 |
| exon | 172895 | 173416 |
| CDS | 168608 | 168730 |
| CDS | 168826 | 168939 |
| CDS | 168995 | 169081 |
| CDS | 169518 | 169610 |
| CDS | 169708 | 169827 |
| CDS | 170297 | 170413 |
| CDS | 170591 | 170686 |
| CDS | 170759 | 170874 |
| CDS | 171597 | 171639 |
| CDS | 172028 | 172182 |
| CDS | 172264 | 172304 |
| CDS | 172389 | 172471 |
| CDS | 172895 | 173290 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000236 | NAK (from iTAK) STAT Transcription_Regulator(from PlantTFDB) Glycine,_serine_and_threonine_metabolism magnesium_ion_transport TKL-Pl-5 (from iTAK) magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM001740 | Glycine,_serine_and_threonine_metabolism aminomethyltransferase activity, aspartate kinase activity, Biotin_metabolism Lysine_biosynthesis glycine catabolic process, cellular amino acid biosynthetic process, Fatty_acid_biosynthesis Cysteine_and_methionine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00696.27 | AA_kinase | 86 | 370 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 261 Glycine, serine and threonine metabolism | aspartate kinase [EC:2.7.2.4] | K00928 | |
| Cysteine and methionine metabolism | aspartate kinase [EC:2.7.2.4] | ko00270 | K00928 |
| Lysine biosynthesis | aspartate kinase [EC:2.7.2.4] | ko00300 | K00928 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004072 | aspartate kinase activity |
| GO:0008652 | cellular amino acid biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.