PH01002979G0180's details annotation
1.Annotation
ICBR annotation: CK1_CaseinKinase_1.5 - CK1 includes the casein kinase 1 kinases, expressed
Blast result AT3G23340 : 5.00E-164
Blast annotation: casein kinase I-like 10
2.Location
Scaffold: PH01002979
Strand: -
| Region | Start | End |
| gene | 106035 | 112381 |
| mRNA | 106035 | 112381 |
| exon | 106035 | 106171 |
| exon | 106355 | 106453 |
| exon | 107352 | 107435 |
| exon | 107800 | 107896 |
| exon | 107984 | 108111 |
| exon | 108201 | 108281 |
| exon | 108496 | 108622 |
| exon | 108744 | 108828 |
| exon | 108927 | 108990 |
| exon | 109174 | 109304 |
| exon | 110157 | 110227 |
| exon | 110604 | 110699 |
| exon | 110866 | 111014 |
| exon | 111098 | 111167 |
| exon | 111624 | 111664 |
| exon | 111811 | 112381 |
| CDS | 106074 | 106171 |
| CDS | 106355 | 106453 |
| CDS | 107352 | 107435 |
| CDS | 107800 | 107896 |
| CDS | 107984 | 108111 |
| CDS | 108201 | 108281 |
| CDS | 108496 | 108622 |
| CDS | 108744 | 108828 |
| CDS | 108927 | 108990 |
| CDS | 109174 | 109304 |
| CDS | 110157 | 110227 |
| CDS | 110604 | 110699 |
| CDS | 110866 | 111014 |
| CDS | 111098 | 111167 |
| CDS | 111624 | 111664 |
| CDS | 111811 | 111886 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001048 | F-actin capping protein complex, WASH_complex actin cytoskeleton organization, actin binding, CK1_CK1 (from iTAK) macromolecule biosynthetic process, cytoplasm, holo-[acyl-carrier-protein] synthase activity, Pantothenate_and_CoA_biosynthesis |
| coexpression network | CFinderM001049 | microtubule associated complex, microtubule-based movement, microtubule motor activity, PcG_protein_complex F-actin capping protein complex, Sesquiterpenoid_and_triterpenoid_biosynthesis spindle pole, WASH_complex microtubule organizing center, DNA polymerase III complex, RLK-Pelle_RLCK-V (from iTAK) CK1_CK1 (from iTAK) Pantothenate_and_CoA_biosynthesis macromolecule biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 10 | 251 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0009055 | electron carrier activity |
| GO:0015035 | protein disulfide oxidoreductase activity |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
| GO:0045454 | cell redox homeostasis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.