PH01001208G0410's details annotation
1.Annotation
ICBR annotation: serine/threonine-protein kinase, putative, expressed
Blast result AT2G42960 : 2.00E-159
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01001208
Strand: -
| Region | Start | End |
| gene | 306944 | 322051 |
| mRNA | 306944 | 322051 |
| exon | 306944 | 307634 |
| exon | 307946 | 308020 |
| exon | 308105 | 308342 |
| exon | 308852 | 308976 |
| exon | 309113 | 309318 |
| exon | 309563 | 309689 |
| exon | 309872 | 309958 |
| exon | 311328 | 311425 |
| exon | 311528 | 311593 |
| exon | 313711 | 313827 |
| exon | 314051 | 314083 |
| exon | 314169 | 314349 |
| exon | 314663 | 314806 |
| exon | 315213 | 315258 |
| exon | 316148 | 316236 |
| exon | 316935 | 317021 |
| exon | 317097 | 317306 |
| exon | 317615 | 317824 |
| exon | 317981 | 318070 |
| exon | 319539 | 319668 |
| exon | 319774 | 319944 |
| exon | 320047 | 320211 |
| exon | 321029 | 321133 |
| exon | 321242 | 322051 |
| CDS | 307356 | 307634 |
| CDS | 307946 | 308020 |
| CDS | 308105 | 308342 |
| CDS | 308852 | 308976 |
| CDS | 309113 | 309318 |
| CDS | 309563 | 309689 |
| CDS | 309872 | 309958 |
| CDS | 311328 | 311425 |
| CDS | 311528 | 311593 |
| CDS | 313711 | 313827 |
| CDS | 314051 | 314083 |
| CDS | 314169 | 314349 |
| CDS | 314663 | 314806 |
| CDS | 315213 | 315258 |
| CDS | 316148 | 316236 |
| CDS | 316935 | 317021 |
| CDS | 317097 | 317306 |
| CDS | 317615 | 317824 |
| CDS | 317981 | 318070 |
| CDS | 319539 | 319668 |
| CDS | 319774 | 319944 |
| CDS | 320047 | 320211 |
| CDS | 321029 | 321133 |
| CDS | 321242 | 321900 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001049 | microtubule associated complex, microtubule-based movement, microtubule motor activity, PcG_protein_complex F-actin capping protein complex, Sesquiterpenoid_and_triterpenoid_biosynthesis spindle pole, WASH_complex microtubule organizing center, DNA polymerase III complex, RLK-Pelle_RLCK-V (from iTAK) CK1_CK1 (from iTAK) Pantothenate_and_CoA_biosynthesis macromolecule biosynthetic process, |
| coexpression network | CFinderM001476 | RLK-Pelle_RLCK-V (from iTAK) spermine biosynthetic process, spermidine biosynthetic process, cytoskeleton, Cysteine_and_methionine_metabolism Arginine_and_proline_metabolism microtubule associated complex, adenosylmethionine decarboxylase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 187 | 495 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.