PH01000678G0560's details annotation
1.Annotation
ICBR annotation: DUF1336 domain containing protein, expressed
Blast result AT1G59650 : 2.00E-134
Blast annotation: Protein of unknown function (DUF1336)
2.Location
Scaffold: PH01000678
Strand: +
| Region | Start | End |
| gene | 413537 | 419722 |
| mRNA | 413537 | 419722 |
| exon | 413537 | 414114 |
| exon | 414484 | 414570 |
| exon | 414672 | 415073 |
| exon | 415931 | 416032 |
| exon | 416409 | 416544 |
| exon | 416674 | 416836 |
| exon | 417010 | 417033 |
| exon | 417555 | 417683 |
| exon | 418189 | 418236 |
| exon | 418501 | 418695 |
| exon | 418880 | 419002 |
| exon | 419088 | 419722 |
| CDS | 413880 | 414114 |
| CDS | 414484 | 414570 |
| CDS | 414672 | 415073 |
| CDS | 415931 | 416032 |
| CDS | 416409 | 416544 |
| CDS | 416674 | 416836 |
| CDS | 417010 | 417033 |
| CDS | 417555 | 417683 |
| CDS | 418189 | 418236 |
| CDS | 418501 | 418695 |
| CDS | 418880 | 419002 |
| CDS | 419088 | 419189 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001106 | Endocytosis |
| coexpression network | CFinderM001149 | ketol-acid reductoisomerase activity, branched chain family amino acid biosynthetic process, cellular amino acid biosynthetic process, SCY1_SCYL2 (from iTAK) coenzyme binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, Endocytosis |
| coexpression network | CFinderM001568 | FAR1 Transcription_Regulator(from PlantTFDB) RLK-Pelle_LRR-XV (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07059.11 | DUF1336 | 304 | 569 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.