PH01000685G0130's details annotation
1.Annotation
ICBR annotation: dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
Blast result AT1G48030 : 0.00E+00
Blast annotation: mitochondrial lipoamide dehydrogenase 1
2.Location
Scaffold: PH01000685
Strand: -
| Region | Start | End |
| gene | 71547 | 75588 |
| mRNA | 71547 | 75588 |
| exon | 71547 | 73006 |
| exon | 73071 | 73097 |
| exon | 74750 | 75588 |
| CDS | 71756 | 73006 |
| CDS | 73071 | 73097 |
| CDS | 74750 | 75007 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000571 | glycolysis, Glycolysis_/_Gluconeogenesis Pyruvate_metabolism cytoplasm, Glycine,_serine_and_threonine_metabolism Valine,_leucine_and_isoleucine_degradation glucose catabolic process, Butirosin_and_neomycin_biosynthesis Streptomycin_biosynthesis oxidoreductase_activity,_acting_on_a_sulfur_group_of_donors,_NAD(P)_as_acceptor dihydrolipoyl dehydrogenase activity, phosphoglycerate mutase activity, fructose-bisphosphate aldolase activity, hexokinase activity, potassium ion binding, pyruvate kinase activity, catalytic activity, |
| coexpression network | CFinderM001186 | Valine,_leucine_and_isoleucine_degradation Glycine,_serine_and_threonine_metabolism Zeatin_biosynthesis intramolecular transferase activity, phosphotransferases, oxoglutarate dehydrogenase (succinyl-transferring) activity, dihydrolipoyl dehydrogenase activity, sucrose synthase activity, thiamine pyrophosphate binding, oxidoreductase_activity,_acting_on_a_sulfur_group_of_donors,_NAD(P)_as_acceptor oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, mitochondrial outer membrane, |
| coexpression network | CFinderM001588 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Glycine,_serine_and_threonine_metabolism Valine,_leucine_and_isoleucine_degradation dihydrolipoyl dehydrogenase activity, oxoglutarate dehydrogenase (succinyl-transferring) activity, oxidoreductase_activity,_acting_on_a_sulfur_group_of_donors,_NAD(P)_as_acceptor thiamine pyrophosphate binding, mitochondrial outer membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07992.13 | Pyr_redox_2 | 40 | 373 |
| PF02852.21 | Pyr_redox_dim | 392 | 500 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycolysis / Gluconeogenesis | dihydrolipoamide dehydrogenase [EC:1.8.1.4] | ko00010 | K00382 |
| Citrate cycle (TCA cycle) | dihydrolipoamide dehydrogenase [EC:1.8.1.4] | ko00020 | K00382 |
| Pyruvate metabolism | dihydrolipoamide dehydrogenase [EC:1.8.1.4] | ko00620 | K00382 |
| 298 Glycine, serine and threonine metabolism | dihydrolipoamide dehydrogenase [EC:1.8.1.4] | K00382 | |
| 287 Valine, leucine and isoleucine degradation | dihydrolipoamide dehydrogenase [EC:1.8.1.4] | K00382 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004148 | dihydrolipoyl dehydrogenase activity |
| GO:0005737 | cytoplasm |
| GO:0016491 | oxidoreductase activity |
| GO:0016668 | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor |
| GO:0045454 | cell redox homeostasis |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.