PH01000697G0550's details annotation
1.Annotation
ICBR annotation: ubiquitin conjugating enzyme protein, putative, expressed
Blast result AT2G16920 : 0.00E+00
Blast annotation: ubiquitin-conjugating enzyme 23
2.Location
Scaffold: PH01000697
Strand: +
| Region | Start | End |
| gene | 379306 | 385776 |
| mRNA | 379306 | 385776 |
| exon | 379306 | 381631 |
| exon | 381895 | 382029 |
| exon | 382138 | 382560 |
| exon | 382766 | 382835 |
| exon | 382940 | 383079 |
| exon | 383253 | 383564 |
| exon | 384030 | 385776 |
| CDS | 379667 | 381631 |
| CDS | 381895 | 382029 |
| CDS | 382138 | 382560 |
| CDS | 382766 | 382835 |
| CDS | 382940 | 383079 |
| CDS | 383253 | 383564 |
| CDS | 384030 | 384299 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001235 | ubiquitin ligase complex, protein ubiquitination, binding, Ubiquitin_mediated_proteolysis RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 852 | 987 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | ubiquitin-conjugating enzyme E2 O [EC:6.3.2.19] | ko04120 | K10581 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.