PH01000706G0540's details annotation
1.Annotation
ICBR annotation: glycosyl hydrolase family 47 domain contain protein, expressed
Blast result AT1G27520 : 9.00E-160
Blast annotation: Glycosyl hydrolase family 47 protein
2.Location
Scaffold: PH01000706
Strand: -
| Region | Start | End |
| gene | 441653 | 447780 |
| mRNA | 441653 | 447780 |
| exon | 441653 | 442413 |
| exon | 443167 | 443267 |
| exon | 443355 | 443455 |
| exon | 443673 | 443758 |
| exon | 443856 | 443937 |
| exon | 444045 | 444165 |
| exon | 444391 | 444570 |
| exon | 444663 | 444711 |
| exon | 445560 | 445742 |
| exon | 445866 | 445965 |
| exon | 446116 | 446177 |
| exon | 446413 | 446455 |
| exon | 446633 | 446694 |
| exon | 446926 | 446968 |
| exon | 447630 | 447780 |
| CDS | 442186 | 442413 |
| CDS | 443167 | 443267 |
| CDS | 443355 | 443455 |
| CDS | 443673 | 443758 |
| CDS | 443856 | 443937 |
| CDS | 444045 | 444165 |
| CDS | 444391 | 444570 |
| CDS | 444663 | 444711 |
| CDS | 445560 | 445742 |
| CDS | 445866 | 445965 |
| CDS | 446116 | 446177 |
| CDS | 446413 | 446455 |
| CDS | 446633 | 446694 |
| CDS | 446926 | 446968 |
| CDS | 447630 | 447634 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001478 | GH47 Glycoside_Hydrolases purine ribonucleoside monophosphate biosynthetic process, IMP biosynthetic process, mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, deaminase activity, AMP deaminase activity, potassium_ion_transmembrane_transport membrane, potassium ion transmembrane transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH47 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01532.19 | Glyco_hydro_47 | 38 | 384 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | ER degradation enhancer, mannosidase alpha-like 1 | ko04141 | K10084 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
| GO:0005509 | calcium ion binding |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.