PH01000706G0760's details annotation
1.Annotation
ICBR annotation: metalloendoproteinase 1 precursor, putative, expressed
Blast result AT1G70170 : 5.70E-90
Blast annotation: matrix metalloproteinase
2.Location
Scaffold: PH01000706
Strand: +
| Region | Start | End |
| gene | 557455 | 559008 |
| mRNA | 557455 | 559008 |
| exon | 557455 | 559008 |
| CDS | 557695 | 558801 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000578 | extracellular matrix, NF-YC Transcription_Regulator(from PlantTFDB) protein-disulfide_reductase_activity intracellular_signal_transduction metallopeptidase activity, NAC Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01471.17 | PG_binding_1 | 62 | 117 |
| PF00413.23 | Peptidase_M10 | 161 | 319 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004222 | metalloendopeptidase activity |
| GO:0006508 | proteolysis |
| GO:0008237 | metallopeptidase activity |
| GO:0008270 | zinc ion binding |
| GO:0031012 | extracellular matrix |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.