Annotation of co-expression genes

PH01000708G0750's details annotation

1.Annotation

ICBR annotation: cytochrome P450 86A1, putative, expressed

Blast result AT2G45510 : 5.00E-141
Blast annotation: cytochrome P450, family 704, subfamily A, polypeptide 2

2.Location

Scaffold: PH01000708
Strand: -

RegionStartEnd
gene452825459584
mRNA452825459584
exon452825453430
exon453723454009
exon455111455189
exon455370455452
exon455886456086
exon456711457046
exon457384457668
exon458061458288
exon458917459584
CDS452992453430
CDS453723454009
CDS455111455189
CDS455370455452
CDS455886456086
CDS456711457046
CDS457384457668
CDS458061458288
CDS458917459261

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000133C2H2 Transcription_Regulator(from PlantTFDB)
RWP-RK Transcription_Regulator(from iTAK)
Nin-like Transcription_Regulator(from PlantTFDB)
carbohydrate phosphorylation,
coexpression networkCFinderM000824cytoplasm,
aromatic amino acid family metabolic process,
carbohydrate phosphorylation,
galactose metabolic process,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
galactokinase activity,
iron ion binding,
heme binding,
electron carrier activity,
kinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00067.21p45089501
PF01080.16Presenilin490615

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004190aspartic-type endopeptidase activity
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016021integral to membrane
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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