Annotation of co-expression genes

PH01000722G0200's details annotation

1.Annotation

ICBR annotation: peptidase, putative, expressed

Blast result AT1G44820 : 1.00E-152
Blast annotation: Peptidase M20/M25/M40 family protein

2.Location

Scaffold: PH01000722
Strand: +

RegionStartEnd
gene191718195768
mRNA191718195768
exon191718192897
exon194991195128
exon195228195467
exon195544195768
CDS192043192897
CDS194991195128
CDS195228195467
CDS195544195624

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001746cellular amino acid metabolic process,
Glycine,_serine_and_threonine_metabolism
aminoacylase activity,
Lysine_biosynthesis
Arginine_and_proline_metabolism
Cysteine_and_methionine_metabolism
metallopeptidase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01546.27Peptidase_M2097429
PF07687.13M20_dimer213325

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Arginine and proline metabolismaminoacylase [EC:3.5.1.14]ko00330K14677

10.Gene Ontology

GO AccessionGO Annotation
GO:0004046aminoacylase activity
GO:0005737cytoplasm
GO:0006508proteolysis
GO:0006520cellular amino acid metabolic process
GO:0008152metabolic process
GO:0008237metallopeptidase activity
GO:0016787hydrolase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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