PH01000723G0500's details annotation
1.Annotation
ICBR annotation: peptide transporter PTR2, putative, expressed
Blast result AT2G02040 : 6.30E-83
Blast annotation: peptide transporter 2
2.Location
Scaffold: PH01000723
Strand: -
| Region | Start | End |
| gene | 311893 | 313717 |
| mRNA | 311893 | 313717 |
| exon | 311893 | 312831 |
| exon | 313299 | 313717 |
| CDS | 312009 | 312831 |
| CDS | 313299 | 313702 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001710 | membrane, CBM22 Carbohydrate-Binding_Modules GH10 Glycoside_Hydrolases hydrolase activity, acting on glycosyl bonds, hydrogen-translocating pyrophosphatase activity, transporter activity, inorganic diphosphatase activity, proton transport, transport, isoprenoid biosynthetic process, Terpenoid_backbone_biosynthesis Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00854.20 | PTR2 | 153 | 366 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.