Annotation of co-expression genes

PH01000723G0520's details annotation

1.Annotation

ICBR annotation: peptide transporter PTR2, putative, expressed

Blast result AT1G62200 : 1.80E-40
Blast annotation: Major facilitator superfamily protein

2.Location

Scaffold: PH01000723
Strand: -

RegionStartEnd
gene318639321794
mRNA318639321794
exon318639319286
exon320062321794
CDS318859319286
CDS320062320089

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001418membrane,
proton transport,
Ether_lipid_metabolism
inorganic diphosphatase activity,
hydrogen-translocating pyrophosphatase activity,
Glycerophospholipid_metabolism
Oxidative_phosphorylation
coexpression networkCFinderM001710membrane,
CBM22 Carbohydrate-Binding_Modules
GH10 Glycoside_Hydrolases
hydrolase activity, acting on glycosyl bonds,
hydrogen-translocating pyrophosphatase activity,
transporter activity,
inorganic diphosphatase activity,
proton transport,
transport,
isoprenoid biosynthetic process,
Terpenoid_backbone_biosynthesis
Oxidative_phosphorylation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00854.20PTR210134

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005215transporter activity
GO:0006810transport
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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