PH01000732G0370's details annotation
1.Annotation
ICBR annotation: WD domain and HEAT domain containing protein, putative, expressed
Blast result AT4G29380 : 0.00E+00
Blast annotation: protein kinase family protein / WD-40 repeat family protein
2.Location
Scaffold: PH01000732
Strand: -
| Region | Start | End |
| gene | 267882 | 276182 |
| mRNA | 267882 | 276182 |
| exon | 267882 | 268533 |
| exon | 268574 | 268621 |
| exon | 269059 | 269158 |
| exon | 269242 | 269477 |
| exon | 269742 | 272642 |
| exon | 272734 | 272910 |
| exon | 274163 | 274236 |
| exon | 275905 | 276182 |
| CDS | 268354 | 268533 |
| CDS | 268574 | 268621 |
| CDS | 269059 | 269158 |
| CDS | 269242 | 269477 |
| CDS | 269742 | 272642 |
| CDS | 272734 | 272910 |
| CDS | 274163 | 274236 |
| CDS | 275905 | 275935 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000404 | Valine,_leucine_and_isoleucine_degradation Benzoate_degradation RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) Biosynthesis_of_unsaturated_fatty_acids alpha-Linolenic_acid_metabolism Fatty_acid_metabolism Peroxisome G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001269 | regulation of translational initiation, 'de novo' IMP biosynthetic process, autophagy, phosphoribosylformylglycinamidine cyclo-ligase activity, eukaryotic translation initiation factor 3 complex, cytoplasm, ribosome binding, |
| coexpression network | CFinderM001324 | Valine,_leucine_and_isoleucine_degradation Benzoate_degradation metabolic process, Biosynthesis_of_unsaturated_fatty_acids Fatty_acid_metabolism alpha-Linolenic_acid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02985.21 | HEAT | 317 | 342 |
| PF00400.31 | WD40 | 815 | 851 |
| PF00400.31 | WD40 | 1218 | 1248 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.